Acidicapsa
Genus of bacteria
Acidicapsa | |
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Scientific classification ![]() | |
Domain: | Bacteria |
Phylum: | Acidobacteriota |
Class: | "Acidobacteriia" |
Order: | Acidobacteriales |
Family: | Acidobacteriaceae |
Genus: | Acidicapsa Kulichevskaya et al. 2012[1] |
Type species | |
Acidicapsa borealis Kulichevskaya et al. 2012 | |
Species | |
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Acidicapsa is a bacterial genus from the family of Acidobacteriaceae.[1][4][5]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[6]
16S rRNA based LTP_08_2023[7][8][9] | 120 marker proteins based GTDB 08-RS214[10][11][12] | |||||||||||||||||||||||||||||||||
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See also
References
- ^ a b c A.C. Parte; et al. "Acidicapsa". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ Parker, Charles Thomas; Garrity, George M (2017). Parker, Charles Thomas; Garrity, George M. (eds.). "Nomenclature Abstract for Acidicapsa acidiphila Falagán et al. 2017". The NamesforLife Abstracts. doi:10.1601/nm.30113 (inactive 2024-04-17).
{{cite journal}}
: CS1 maint: DOI inactive as of April 2024 (link) - ^ Falagán, C; Foesel, B; Johnson, B (May 2017). "Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters". Extremophiles: Life Under Extreme Conditions. 21 (3): 459–469. doi:10.1007/s00792-017-0916-4. PMID 28229259. S2CID 254082524.
- ^ "Acidicapsa". www.uniprot.org.
- ^ Parker, Charles Thomas; Garrity, George M (2012). Parker, Charles Thomas; Garrity, George M. (eds.). "Nomenclature Abstract for Acidicapsa Kulichevskaya et al. 2012". The NamesforLife Abstracts. doi:10.1601/nm.23202 (inactive 2024-04-17).
{{cite journal}}
: CS1 maint: DOI inactive as of April 2024 (link) - ^ Sayers; et al. "Acidicapsa". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
Further reading
- Kulichevskaya, I. S.; Kostina, L. A.; Valaskova, V.; Rijpstra, W. I. C.; Sinninghe Damste, J. S.; de Boer, W.; Dedysh, S. N. (19 August 2011). "Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood". International Journal of Systematic and Evolutionary Microbiology. 62 (Pt 7): 1512–1520. doi:10.1099/ijs.0.034819-0. PMID 1856984.
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Prokaryotes: Bacteria classification
- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Hacrobia
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi
- Mesomycetozoea)
BV1, BV3, BV5
others |
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Cyanoprokaryota |
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Firmicutes BV3 Low GC |
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- "Elulota"
- "Elulimicrobia"
- "Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
Synergistetes |
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Thermocalda |
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- Fusobacteriota
- Fusobacteriia
- "Macinerneyibacteriota"
- "Macinerneyibacteriia"
- "Muiribacteriota"
- "Muiribacteriia"
- "Rifleibacteriota"
- "Ozemibacteria"
- "Walliibacteriota"
BV2, BV4
Clade 1 |
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Clade 2 |
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Spirochaeto bacteriobiontes |
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PVC group (Planctobacteria) |
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FCB group (Sphingobacteria) |
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Proteobacteria BV2 |
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- "Qinglongiota"
- "Qinglongiia"
- "Salinosulfoleibacteria"
- "Teskebacteria"
- Source: Bergey's Manual (2001–2012)
- Alternative views: Wikispecies
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