Acidimicrobiia
Acidimicrobiia | |
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Acidimicrobium ferrooxidans | |
Scientific classification ![]() | |
Domain: | Bacteria |
Phylum: | Actinomycetota Norris 2013[2] |
Class: | Acidimicrobiia Stackebrandt et al. 1997[1] |
Type genus | |
Acidimicrobium Clark and Norris 1996 | |
Families[3] | |
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Synonyms | |
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The Acidimicrobiia are a class of Actinomycetota, in which three families, eight genera, and nine species have been described, Acidimicrobium ferrooxidans is the type species of the order.[1]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI).[4]
MLST based phylogeny of 30 proteins.[5] | 16S rRNA based LTP_08_2023[6][7][8] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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120 marker proteins based GTDB 08-RS214[9][10][11] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Genera incertae sedis
- "Spongiisociales" Nguyen 2022
- "Spongiisociaceae" Nguyen 2022
- "Candidatus Spongiisocius" Nguyen 2022
- "Spongiisociaceae" Nguyen 2022
- Acidimicrobiales
- Acidithiomicrobium Davis-Belmar & Norris 2009
- "Microtrichaceae"
- "Candidatus Limnosphaera" Kim, Kang & Cho 2017
See also
References
- ^ a b Stackebrandt, E.; Rainey, F. A.; Ward-Rainey, N. L. (1997-04-01). "Proposal for a New Hierarchic Classification System, Actinobacteria classis nov". International Journal of Systematic Bacteriology. 47 (2): 479–491. doi:10.1099/00207713-47-2-479. ISSN 0020-7713.
- ^ Norris PR (2012). "Class II. Acidimicrobiia class. nov.". In Goodfellow M, Kämpfer P, Trujillo ME, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 5 (The Actinobacteria), part B (2nd ed.). New York: Springer. p. 1968.
- ^ a b Euzéby JP, Parte AC. "Acidimicrobiia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 22, 2021.
- ^ Sayers; et al. "Acidimicrobiia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- ^ Hu D, Cha G, Gao B. (2018). "A phylogenomic and molecular markers-based analysis of the class Acidimicrobiia". Frontiers in Microbiology. 9: 987. doi:10.3389/fmicb.2018.00987. PMC 5962788. PMID 29867887.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
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- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Hacrobia
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi
- Mesomycetozoea)
BV1, BV3, BV5
others |
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Cyanoprokaryota |
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Firmicutes BV3 Low GC |
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- "Elulota"
- "Elulimicrobia"
- "Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
Synergistetes |
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Thermocalda |
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- Fusobacteriota
- Fusobacteriia
- "Macinerneyibacteriota"
- "Macinerneyibacteriia"
- "Muiribacteriota"
- "Muiribacteriia"
- "Rifleibacteriota"
- "Ozemibacteria"
- "Walliibacteriota"
BV2, BV4
Clade 1 |
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Clade 2 |
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Spirochaeto bacteriobiontes |
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PVC group (Planctobacteria) |
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FCB group (Sphingobacteria) |
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Proteobacteria BV2 |
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- "Qinglongiota"
- "Qinglongiia"
- "Salinosulfoleibacteria"
- "Teskebacteria"
- Source: Bergey's Manual (2001–2012)
- Alternative views: Wikispecies
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