Carboxydocella
Genus of bacteria
Carboxydocella | |
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Carboxydocella Sporoproducens | |
Scientific classification | |
Domain: | Bacteria |
Phylum: | Bacillota |
Class: | Clostridia |
Order: | Eubacteriales |
Family: | "Carboxydocellaceae" |
Genus: | Carboxydocella Sokolova et al. 2002[1] |
Type species | |
Carboxydocella thermautotrophica Sokolova et al. 2002 | |
Species | |
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Carboxydocella is a Gram-positive and obligate anaerobe bacterial genus from the family of Syntrophomonadaceae.[1][2][3]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI)[4]
16S rRNA based LTP_01_2022[5][6][7] | 120 marker proteins based GTDB 07-RS207[8][9][10] | |||||||||||||||||||||
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See also
References
- ^ a b c A.C. Parte; et al. "Carboxydocella". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ "Carboxydocella". www.uniprot.org.
- ^ Sokolova, Tatyana G. (1 January 2015). "Carboxydocella". Bergey's Manual of Systematics of Archaea and Bacteria. John Wiley & Sons, Ltd. doi:10.1002/9781118960608.gbm00728.
- ^ Sayers; et al. "Carboxydocella". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
- ^ "The LTP". Retrieved 23 February 2022.
- ^ "LTP_all tree in newick format". Archived from the original on 4 September 2022. Retrieved 23 February 2022.
- ^ "LTP_01_2022 Release Notes" (PDF). Retrieved 23 February 2022.
- ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
- ^ "bac120_r207.sp_labels". Genome Taxonomy Database. Retrieved 20 June 2022.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
Further reading
- Sokolova, TG; Kostrikina, NA; Chernyh, NA; Tourova, TP; Kolganova, TV; Bonch-Osmolovskaya, EA (November 2002). "Carboxydocella thermautotrophica gen. nov., sp. nov., a novel anaerobic, CO-utilizing thermophile from a Kamchatkan hot spring". International Journal of Systematic and Evolutionary Microbiology. 52 (Pt 6): 1961–7. doi:10.1099/00207713-52-6-1961. PMID 12508854.
- Slepova, TV; Sokolova, TG; Lysenko, AM; Tourova, TP; Kolganova, TV; Kamzolkina, OV; Karpov, GA; Bonch-Osmolovskaya, EA (April 2006). "Carboxydocella sporoproducens sp. nov., a novel anaerobic CO-utilizing/H2-producing thermophilic bacterium from a Kamchatka hot spring". International Journal of Systematic and Evolutionary Microbiology. 56 (Pt 4): 797–800. doi:10.1099/ijs.0.63961-0. PMID 16585697.
- Tulasi, Satyanarayana; Jennifer, Littlechild; Yutaka, Kawarabayasi (2013). Thermophilic microbes in environmental and industrial biotechnology biotechnology of thermophiles (2nd ed.). Dordrecht: Springer. ISBN 94-007-5899-5.
- Eric, Lichtfouse (2010). Biodiversity, biofuels, agroforestry and conservation agriculture. Dordrecht: Springer Science+Business Media B.V. ISBN 90-481-9513-6.
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Prokaryotes: Bacteria classification
- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Hacrobia
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi
- Mesomycetozoea)
BV1, BV3, BV5
others |
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Cyanoprokaryota |
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Firmicutes BV3 Low GC |
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- "Elulota"
- "Elulimicrobia"
- "Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
Synergistetes |
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Thermocalda |
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- Fusobacteriota
- Fusobacteriia
- "Macinerneyibacteriota"
- "Macinerneyibacteriia"
- "Muiribacteriota"
- "Muiribacteriia"
- "Rifleibacteriota"
- "Ozemibacteria"
- "Walliibacteriota"
BV2, BV4
Clade 1 |
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Clade 2 |
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Spirochaeto bacteriobiontes |
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PVC group (Planctobacteria) |
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FCB group (Sphingobacteria) |
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Proteobacteria BV2 |
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- "Qinglongiota"
- "Qinglongiia"
- "Salinosulfoleibacteria"
- "Teskebacteria"
- Source: Bergey's Manual (2001–2012)
- Alternative views: Wikispecies
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