Carboxydothermus

Genus of bacteria

Carboxydothermus
Scientific classification
Domain:	Bacteria
Phylum:	Bacillota
Class:	Clostridia
Order:	Thermoanaerobacterales
Family:	Thermoanaerobacteraceae
Genus:	Carboxydothermus Svetlichny et al. 1991^[1]
Type species
Carboxydothermus hydrogenoformans Svetlichny et al. 1991
Species
C. ferrireducens C. hydrogenoformans C. islandicus C. pertinax C. siderophilus
Synonyms
Thermoterrabacterium Slobodkin et al. 1997^[2]

Carboxydothermus is a genus of thermophilic, anaerobic bacteria from the family of Thermoanaerobacteraceae.^[1]^[2]^[3]^[4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[1] and National Center for Biotechnology Information (NCBI).^[5]

16S rRNA based LTP_08_2023^[6]^[7]^[8]

120 marker proteins based GTDB 08-RS214.^[9]^[10]^[11]

	C. pertinax Yoneda et al. 2012

	C. siderophilus Slepova et al. 2009

C. hydrogenoformans Svetlichny et al. 1991

	C. ferrireducens (Slobodkin et al. 1997) Slobodkin et al. 2006

	C. islandicus Novikov et al. 2011

C. pertinax

	C. islandicus

	C. hydrogenoformans

References

^ ^a ^b ^c J.P. Euzéby. "Carboxydothermus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-07-20.
^ ^a ^b "Carboxydothermus". www.uniprot.org.
^ Parker, Charles Thomas; Osier, Nicole Danielle; Garrity, George M (2009). Parker, Charles Thomas; Garrity, George M (eds.). "Nomenclature Abstract for Carboxydothermus Svetlichny et al. 1991 emend. Novikov et al. 2011". The NamesforLife Abstracts. doi:10.1601/nm.4313 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
^ Vos, Paul; Garrity, George; Jones, Dorothy; Krieg, Noel R.; Ludwig, Wolfgang; Rainey, Fred A.; Schleifer, Karl-Heinz; Whitman, William B. (2011). Bergey's Manual of Systematic Bacteriology: Volume 3: The Firmicutes. Springer Science & Business Media. ISBN 9780387684895.
^ Sayers; et al. "Carboxydothermus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-07-20.
^ "The LTP". Retrieved 20 November 2023.
^ "LTP_all tree in newick format". Retrieved 20 November 2023.
^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

Slepova, TV; Sokolova, TG; Kolganova, TV; Tourova, TP; Bonch-Osmolovskaya, EA (February 2009). "Carboxydothermus siderophilus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic, dissimilatory Fe(III)-reducing bacterium from a Kamchatka hot spring". International Journal of Systematic and Evolutionary Microbiology. 59 (Pt 2): 213–7. doi:10.1099/ijs.0.000620-0. PMID 19196756.
Yoneda, Y; Yoshida, T; Kawaichi, S; Daifuku, T; Takabe, K; Sako, Y (July 2012). "Carboxydothermus pertinax sp. nov., a thermophilic, hydrogenogenic, Fe(III)-reducing, sulfur-reducing carboxydotrophic bacterium from an acidic hot spring". International Journal of Systematic and Evolutionary Microbiology. 62 (Pt 7): 1692–7. doi:10.1099/ijs.0.031583-0. PMID 21908679.
Wu, M; Ren, Q; Durkin, AS; Daugherty, SC; Brinkac, LM; Dodson, RJ; Madupu, R; Sullivan, SA; Kolonay, JF; Haft, DH; Nelson, WC; Tallon, LJ; Jones, KM; Ulrich, LE; Gonzalez, JM; Zhulin, IB; Robb, FT; Eisen, JA (November 2005). "Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901". PLOS Genetics. 1 (5): e65. doi:10.1371/journal.pgen.0010065. PMC 1287953. PMID 16311624.

Prokaryotes: Bacteria classification

Domain

Archaea

Bacteria

Eukaryota

(major groups

Excavata

Diaphoretickes

Hacrobia

Cryptista

Rhizaria

Alveolata

Stramenopiles

Plants

Amorphea

Amoebozoa

Opisthokonta

Animals

Fungi

Mesomycetozoea)

Terrabacteria
BV1, BV3, BV5

others	Actinomycetota Acidimicrobiia Actinomycetia "Aquicultoria" Coriobacteriia "Geothermincolia" "Humimicrobiia" Rubrobacteria Thermoleophilia "Bipolaricaulota" "Bipolaricaulia" Chloroflexota "Caldilineia" Chloroflexia Dehalococcoidia Ktedonobacteria "Limnocylindria" Deinococcota "Deinococcia" "Dormiibacterota" "Dormibacteria" Armatimonadota "Abditibacteriia" Armatimonadia Chthonomonadia Fimbriimonadia "Heboniibacteriia" "Zipacnadia" "Eremiobacterota" "Eudoremicrobiia" "Xenobiia" "Eremiobacteria"
Cyanoprokaryota	Cyanobacteriota Cyanobacteria "Sericytochromatia" "Vampirovibrionophyceae" "Margulisiibacteriota" "Marinamargulisbacteria" "Riflemargulisbacteria" "Saganbacteria" "Termititenacia"
Firmicutes BV3 Low GC	Bacillota "Bacillia" Bacillota A "Clostridiia" "Thermoanaerobacteria" "Thermosediminibacteria" Bacillota D "Dethiobacteria" "Natranaerobiia" "Proteinivoracia" Bacillota E "Sulfobacillia" "Symbiobacteriia" "Thermaerobacteria" Bacillota G "Hydrogenisporia" Limnochordia "Desulfotomaculota" "Carboxydocellia" "Carboxydothermia" "Dehalobacteriia" "Desulfitobacteriia" "Desulfotomaculia" "Moorellia" "Peptococcia" "Syntrophomonadia" "Thermincolia" "Halanaerobiaeota" "Halanaerobiia" "Selenobacteria" "Selenomonadia"

CPR group

"Elulota"
- "Elulimicrobia"
"Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"

Thermotogida

Synergistetes	Atribacterota Atribacteria Synergistota Synergistia
Thermocalda	Caldisericota Caldisericia Coprothermobacterota Coprothermobacteria Dictyoglomerota Dictyoglomeria "Lithacetigenota" "Lithacetigenia" "Thermodesulfobiota" "Thermodesulfobiia" Thermotogota "Thermotogia"

Fusobacterida

Fusobacteriota
- Fusobacteriia
"Macinerneyibacteriota"
- "Macinerneyibacteriia"
"Muiribacteriota"
- "Muiribacteriia"
"Rifleibacteriota"
- "Ozemibacteria"
"Walliibacteriota"

Hydrobacteria
BV2, BV4

Clade 1

"Aerophobota"
- "Aerophobia"
"Auribacterota"
- "Ancaeobacteria"
- "Auribacteria"
- "Erginobacteria"
- "Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
- Elusimicrobiia
- Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
- "Omnitrophia"
- "Velamenicoccia"
"Ratteibacteriota"

Clade 2

"Abyssubacteria"
"Hinthialibacterota"
- "Hinthialibacteria"
"Hydrogenedentota"
- "Hydrogenedentia"
"Poribacteriota"
"Saltatorellota"
- "Saltatorellae"
"Sumerlaeota"
- "Sumerlaeia"

Spirochaeto
bacteriobiontes

"Babelota"
- "Babeliae"
"Lindowiibacteriota"
Spirochaetota
- "Brevinematia"
- "Brachyspirae"
- "Exilispiria"
- "Leptospiria"
- "Spirochaetia"

PVC group
(Planctobacteria)

Chlamydiota
- Chlamydiia
Planctomycetota
- "Brocadiia"
- Phycisphaeria
- Planctomycetia
- "Uabimicrobiia"
Verrucomicrobiota
- Kiritimatiellia
- Lentisphaeria
- Verrucomicrobiia

FCB group
(Sphingobacteria)

Bacteroidota
- Bacteroidia
- Chlorobiia
- "Ignavibacteriia"
- "Kapabacteria"
- "Kryptoniia"
- Rhodothermia
Calditrichota
- Calditrichia
"Cloacimonadota"
- "Cloacimonadia"
"Coatesiibacteriota"
"Cosmopoliota"
- "Cosmopolitia"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Eiseniibacteriota"
"Electryoneota"
- "Electryoneia"
- "Tariuqbacteria"
"Fermentibacterota"
- "Fermentibacteria"
Fibrobacterota
- Chitinivibrionia
- Fibrobacteria
- "Raymondbacteriia"
Gemmatimonadota
- Gemmatimonadia
- "Glassbacteria"
"Heilongiota"
- "Heilongiia"
"Hydrothermota"
- "Hydrothermia"
- "Stahlbacteria"
"Krumholzibacteriota"
- "Krumholzibacteriia"
"Latescibacterota"
- "Handelsmanbacteria"
- "Latescibacteria"
"Neomarinimicrobiota"
"Marinisomatota"
- "Marinisomatia"
"Tianyaibacteriota"
"Zixiibacteriota"

Proteobacteria
BV2

Aquificida	"Acidulodesulfobacteriota" "Acidulodesulfobacteriia" Aquificota Aquificia "Desulfurobacteriia" Campylobacterota "Campylobacteria" Desulfurellia "Calescibacteriota" "Calescibacteriia" Chrysiogenota Chrysiogenia "Dadaibacteriota" "Dadabacteria" Deferribacterota "Deferribacteria" Desulfobacterota G Syntrophorhabdia "Thermosulfidibacterota" "Thermosulfidibacteria"
Deltaproteobacteria	Bdellovibrionota Bacteriovoracia Bdellovibrionia Oligoflexia "Binatota" "Binatia" "Deferrimicrobiota" "Anaeroferrophilia" "Deferrimicrobiia" "Deferrisomatota" Deferrisomatia "Desulfuromonadota" Desulfuromonadia "Lernaellota" "Lernaellia" "Methylomirabilota" "Methylomirabilia" "Moduliflexota" "Moduliflexia" Myxococcota Myxococcia "Bradymonadia" Polyangiia Nitrospinota Nitrospinia Nitrospirota Nitrospiria "Thermodesulfovibrionia" SAR324 "Lambdaproteobacteria" "Schekmaniibacteriota" "Tectimicrobiota" "Entotheonellia" "Thermodesulfobacteriota"
others	Acidobacteriota "Acidobacteriia" "Aminicenantia" Blastocatellia "Fischerbacteria" "Guanabaribacteriia" "Holophagia" "Polarisedimenticolia" Thermoanaerobaculia Vicinamibacteria "Canglongiota" "Canglongiia" "Leptospirillaeota" "Leptospirillia" Pseudomonadota "Caulobacteria" "Mariprofundia" "Magnetococcia" "Pseudomonadia"

others

"Qinglongiota"
- "Qinglongiia"
"Salinosulfoleibacteria"
"Teskebacteria"

Source: Bergey's Manual (2001–2012)
Alternative views: Wikispecies

Taxon identifiers
Carboxydothermus	Wikidata: Q3658321 Wikispecies: Carboxydothermus EoL: 100698 GBIF: 3226441 IRMNG: 1010464 ITIS: 956902 LPSN: carboxydothermus.html NCBI: 129957 Open Tree of Life: 247040