Carboxydothermus
Genus of bacteria
Carboxydothermus | |
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Scientific classification ![]() | |
Domain: | Bacteria |
Phylum: | Bacillota |
Class: | Clostridia |
Order: | Thermoanaerobacterales |
Family: | Thermoanaerobacteraceae |
Genus: | Carboxydothermus Svetlichny et al. 1991[1] |
Type species | |
Carboxydothermus hydrogenoformans Svetlichny et al. 1991 | |
Species | |
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Synonyms | |
Thermoterrabacterium Slobodkin et al. 1997[2] |
Carboxydothermus is a genus of thermophilic, anaerobic bacteria from the family of Thermoanaerobacteraceae.[1][2][3][4]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[5]
16S rRNA based LTP_08_2023[6][7][8] | 120 marker proteins based GTDB 08-RS214.[9][10][11] | |||||||||||||||||||||||||||
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See also
References
- ^ a b c J.P. Euzéby. "Carboxydothermus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-07-20.
- ^ a b "Carboxydothermus". www.uniprot.org.
- ^ Parker, Charles Thomas; Osier, Nicole Danielle; Garrity, George M (2009). Parker, Charles Thomas; Garrity, George M (eds.). "Nomenclature Abstract for Carboxydothermus Svetlichny et al. 1991 emend. Novikov et al. 2011". The NamesforLife Abstracts. doi:10.1601/nm.4313 (inactive 2024-04-17).
{{cite journal}}
: CS1 maint: DOI inactive as of April 2024 (link) - ^ Vos, Paul; Garrity, George; Jones, Dorothy; Krieg, Noel R.; Ludwig, Wolfgang; Rainey, Fred A.; Schleifer, Karl-Heinz; Whitman, William B. (2011). Bergey's Manual of Systematic Bacteriology: Volume 3: The Firmicutes. Springer Science & Business Media. ISBN 9780387684895.
- ^ Sayers; et al. "Carboxydothermus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-07-20.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
Further reading
- Slepova, TV; Sokolova, TG; Kolganova, TV; Tourova, TP; Bonch-Osmolovskaya, EA (February 2009). "Carboxydothermus siderophilus sp. nov., a thermophilic, hydrogenogenic, carboxydotrophic, dissimilatory Fe(III)-reducing bacterium from a Kamchatka hot spring". International Journal of Systematic and Evolutionary Microbiology. 59 (Pt 2): 213–7. doi:10.1099/ijs.0.000620-0. PMID 19196756.
- Yoneda, Y; Yoshida, T; Kawaichi, S; Daifuku, T; Takabe, K; Sako, Y (July 2012). "Carboxydothermus pertinax sp. nov., a thermophilic, hydrogenogenic, Fe(III)-reducing, sulfur-reducing carboxydotrophic bacterium from an acidic hot spring". International Journal of Systematic and Evolutionary Microbiology. 62 (Pt 7): 1692–7. doi:10.1099/ijs.0.031583-0. PMID 21908679.
- Wu, M; Ren, Q; Durkin, AS; Daugherty, SC; Brinkac, LM; Dodson, RJ; Madupu, R; Sullivan, SA; Kolonay, JF; Haft, DH; Nelson, WC; Tallon, LJ; Jones, KM; Ulrich, LE; Gonzalez, JM; Zhulin, IB; Robb, FT; Eisen, JA (November 2005). "Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901". PLOS Genetics. 1 (5): e65. doi:10.1371/journal.pgen.0010065. PMC 1287953. PMID 16311624.
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Prokaryotes: Bacteria classification
- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Hacrobia
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi
- Mesomycetozoea)
BV1, BV3, BV5
others |
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Cyanoprokaryota |
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Firmicutes BV3 Low GC |
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- "Elulota"
- "Elulimicrobia"
- "Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
Synergistetes |
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Thermocalda |
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- Fusobacteriota
- Fusobacteriia
- "Macinerneyibacteriota"
- "Macinerneyibacteriia"
- "Muiribacteriota"
- "Muiribacteriia"
- "Rifleibacteriota"
- "Ozemibacteria"
- "Walliibacteriota"
BV2, BV4
Clade 1 |
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Clade 2 |
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Spirochaeto bacteriobiontes |
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PVC group (Planctobacteria) |
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FCB group (Sphingobacteria) |
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Proteobacteria BV2 |
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- "Qinglongiota"
- "Qinglongiia"
- "Salinosulfoleibacteria"
- "Teskebacteria"
- Source: Bergey's Manual (2001–2012)
- Alternative views: Wikispecies
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