Deferribacter
Genus of bacteria
| Deferribacter | |
|---|---|
Scientific classification  | |
| Domain: | Bacteria |
| Phylum: | Deferribacterota |
| Class: | Deferribacteres |
| Order: | Deferribacterales |
| Family: | Deferribacteraceae |
| Genus: | Deferribacter Greene et al. 1997[1] |
| Type species | |
| Deferribacter thermophilus Greene et al. 1997 | |
| Species | |
| |
Deferribacter is a genus in the phylum Deferribacterota (Bacteria).[2]
Etymology
The name Deferribacter derives from:
Latin pref. de-, from; Latin noun ferrum, iron; Neo-Latin masculine gender noun, a rodbacter, nominally meaning "a rod", but in effect meaning a bacterium, rod; Neo-Latin masculine gender noun Deferribacter, rod that reduces iron.[3]
Species
The genus contains 4 species, namely[3]
- D. abyssi Miroshnichenko et al. 2003; (Latin genitive case noun abyssi, of immense depths, living in the depths of the ocean.)[4]
- D. autotrophicus Slobodkina et al. 2009; (Neo-Latin masculine gender adjective autotrophicus, autotrophic.)[5]
- D. desulfuricans Takai et al. 2003; (Neo-Latin participle adjective desulfuricans, reducing sulfur.)[6]
- D. thermophilus Greene et al. 1997 ((Type species of the genus).; Greek noun thermē (θέρμη), heat; Neo-Latin masculine gender adjective philus (from Greek masculine gender adjective φίλος), friend, loving; Neo-Latin masculine gender adjective thermophilus, heat loving.)[1]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[7] and National Center for Biotechnology Information (NCBI)[8]
| 16S rRNA based LTP_01_2022[9][10][11] | GTDB 07-RS207 by Genome Taxonomy Database[12][13][14] | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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See also
References
- ^ a b "Deferribacter thermophilus gen. nov., sp. nov., a Novel Thermophilic Manganese- and Iron-Reducing Bacterium Isolated from a Petroleum Reservoir -- GREENE et al. 47 (2): 505 -- International Journal of Systematic and Evolutionary Microbiology". Archived from the original on 2008-08-29. Retrieved 2011-05-28.
- ^ Classification of Genera DL in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
- ^ a b Deferribacter in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
- ^ "Deferribacter abyssi sp. nov., an anaerobic thermophile from deep-sea hydrothermal vents of the Mid-Atlantic Ridge -- Miroshnichenko et al. 53 (5): 1637 -- International Journal of Systematic and Evolutionary Microbiology". Archived from the original on 2008-10-13. Retrieved 2011-05-28.
- ^ Slobodkina, G. B.; Kolganova, T. V.; Chernyh, N. A.; Querellou, J.; Bonch-Osmolovskaya, E. A.; Slobodkin, A. I. (2009). "Deferribacter autotrophicus sp. Nov., an iron(III)-reducing bacterium from a deep-sea hydrothermal vent". International Journal of Systematic and Evolutionary Microbiology. 59 (6): 1508–1512. doi:10.1099/ijs.0.006767-0. PMID 19502344.
- ^ "Deferribacter desulfuricans sp. nov., a novel sulfur-, nitrate- and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent -- Takai et al. 53 (3): 839 -- International Journal of Systematic and Evolutionary Microbiology". Archived from the original on 2011-05-05. Retrieved 2011-05-28.
- ^ A.C. Parte; et al. "Deferribacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ Sayers; et al. "Deferribacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
- ^ "The LTP". Retrieved 23 February 2022.
- ^ "LTP_all tree in newick format". Archived from the original on 4 September 2022. Retrieved 23 February 2022.
- ^ "LTP_01_2022 Release Notes" (PDF). Retrieved 23 February 2022.
- ^ "GTDB release 07-RS207". Genome Taxonomy Database. Retrieved 20 June 2022.
- ^ "ar53_r207.sp_label". Genome Taxonomy Database. Retrieved 20 June 2022.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 20 June 2022.
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Prokaryotes: Bacteria classification
- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Hacrobia
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi
- Mesomycetozoea)
BV1, BV3, BV5
| others |
|
|---|---|
| Cyanoprokaryota |
|
| Firmicutes BV3 Low GC |
|
- "Elulota"
- "Elulimicrobia"
- "Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
| Synergistetes |
|
|---|---|
| Thermocalda |
|
- Fusobacteriota
- Fusobacteriia
- "Macinerneyibacteriota"
- "Macinerneyibacteriia"
- "Muiribacteriota"
- "Muiribacteriia"
- "Rifleibacteriota"
- "Ozemibacteria"
- "Walliibacteriota"
BV2, BV4
| Clade 1 |
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| Clade 2 |
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| Spirochaeto bacteriobiontes |
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| PVC group (Planctobacteria) |
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| FCB group (Sphingobacteria) |
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| Proteobacteria BV2 |
|
- "Qinglongiota"
- "Qinglongiia"
- "Salinosulfoleibacteria"
- "Teskebacteria"
- Source: Bergey's Manual (2001–2012)
- Alternative views: Wikispecies
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