Rubinisphaera
Genus of bacteria
Rubinisphaera | |
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Scientific classification | |
Domain: | Bacteria |
Phylum: | Planctomycetota |
Class: | Planctomycetia |
Order: | Planctomycetales |
Family: | Planctomycetaceae |
Genus: | Rubinisphaera Scheuner et al. 2015[1] |
Type species | |
Rubinisphaera brasiliensis (Schlesner 1990) Scheuner et al. 2015 | |
Species | |
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Rubinisphaera is a genus of bacteria from the family of Planctomycetaceae with two known species.[1][2] Rubinisphaera brasiliensis has been isolated from water from the Lagoa Vermelha from Brazil.[3][4]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[5] and National Center for Biotechnology Information (NCBI)[6]
16S rRNA based LTP_08_2023[7][8][9] | 120 marker proteins based GTDB 08-RS214[10][11][12] | ||||||||||||||||||||||||||||||
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See also
References
- ^ a b Parte, A.C. "Rubinisphaera". LPSN.
- ^ "Rubinisphaera". www.uniprot.org.
- ^ "Details: DSM-5305". www.dsmz.de.
- ^ Scheuner, C; Tindall, BJ; Lu, M; Nolan, M; Lapidus, A; Cheng, JF; Goodwin, L; Pitluck, S; Huntemann, M; Liolios, K; Pagani, I; Mavromatis, K; Ivanova, N; Pati, A; Chen, A; Palaniappan, K; Jeffries, CD; Hauser, L; Land, M; Mwirichia, R; Rohde, M; Abt, B; Detter, JC; Woyke, T; Eisen, JA; Markowitz, V; Hugenholtz, P; Göker, M; Kyrpides, NC; Klenk, HP (2014). "Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae". Standards in Genomic Sciences. 9: 10. doi:10.1186/1944-3277-9-10. PMC 4334474. PMID 25780503.
- ^ A.C. Parte; et al. "Rubinisphaera". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ Sayers; et al. "Rubinisphaera". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.
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Prokaryotes: Bacteria classification
- Domain
- Archaea
- Bacteria
- Eukaryota
- (major groups
- Excavata
- Diaphoretickes
- Hacrobia
- Cryptista
- Rhizaria
- Alveolata
- Stramenopiles
- Plants
- Hacrobia
- Amorphea
- Amoebozoa
- Opisthokonta
- Animals
- Fungi
- Mesomycetozoea)
BV1, BV3, BV5
others |
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Cyanoprokaryota |
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Firmicutes BV3 Low GC |
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- "Elulota"
- "Elulimicrobia"
- "Patescibacteria"
- ABY1
- "Absconditabacteria"
- "Andersenbacteria"
- "Berkelbacteria"
- "Dojkabacteria"
- "Doudnabacteria"
- "Gracilibacteria"
- "Howlettbacteria"
- "Katanobacteria"
- "Kazanbacteria"
- "Microgenomatia"
- "Paceibacteria"
- "Saccharimonadia"
- "Torokbacteria"
- "Wirthbacteria"
Synergistetes |
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Thermocalda |
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- Fusobacteriota
- Fusobacteriia
- "Macinerneyibacteriota"
- "Macinerneyibacteriia"
- "Muiribacteriota"
- "Muiribacteriia"
- "Rifleibacteriota"
- "Ozemibacteria"
- "Walliibacteriota"
BV2, BV4
Clade 1 |
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Clade 2 |
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Spirochaeto bacteriobiontes |
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PVC group (Planctobacteria) |
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FCB group (Sphingobacteria) |
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Proteobacteria BV2 |
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- "Qinglongiota"
- "Qinglongiia"
- "Salinosulfoleibacteria"
- "Teskebacteria"
- Source: Bergey's Manual (2001–2012)
- Alternative views: Wikispecies
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