S100A16

Protein-coding gene in the species Homo sapiens
S100A16
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

2L50, 2L51, 3NXA

Identifiers
AliasesS100A16, DT1P1A7, S100F, AAG13, S100 calcium binding protein A16
External IDsOMIM: 617437; MGI: 1915110; HomoloGene: 12201; GeneCards: S100A16; OMA:S100A16 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for S100A16
Genomic location for S100A16
Band1q21.3Start153,606,886 bp[1]
End153,613,145 bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for S100A16
Genomic location for S100A16
Band3|3 F1Start90,537,254 bp[2]
End90,543,151 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of pharynx

  • mucosa of ileum

  • skin of arm

  • gingival epithelium

  • oral cavity

  • nasal epithelium

  • vulva

  • human penis

  • skin of abdomen

  • body of tongue
Top expressed in
  • esophagus

  • lip

  • optic nerve

  • skin of abdomen

  • hair follicle

  • conjunctival fornix

  • endothelial cell of lymphatic vessel

  • skin of external ear

  • left colon

  • transitional epithelium of urinary bladder
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • calcium ion binding
  • protein binding
  • protein homodimerization activity
  • metal ion binding
  • RNA binding
Cellular component
  • cytosol
  • plasma membrane
  • nucleolus
  • extracellular exosome
  • nucleus
  • cytoplasm
  • extracellular space
Biological process
  • response to calcium ion
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

140576

67860

Ensembl

ENSG00000188643

ENSMUSG00000074457

UniProt

Q96FQ6

Q9D708

RefSeq (mRNA)

NM_080388
NM_001317007
NM_001317008

NM_026416

RefSeq (protein)

NP_001303936
NP_001303937
NP_525127

NP_001343534
NP_001343535
NP_001343536
NP_001343537
NP_001343538

NP_001343539
NP_080692

Location (UCSC)Chr 1: 153.61 – 153.61 MbChr 3: 90.54 – 90.54 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

S100 calcium-binding protein A16 (S100A16) is a protein that in humans is encoded by the S100A16 gene.[5][6]


References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000188643 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000074457 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Reddy PH, Stockburger E, Gillevet P, Tagle DA (Feb 1998). "Mapping and characterization of novel (CAG)n repeat cDNAs from adult human brain derived by the oligo capture method". Genomics. 46 (2): 174–82. doi:10.1006/geno.1997.5044. PMID 9417904.
  6. ^ "Entrez Gene: S100A16 S100 calcium binding protein A16".

Further reading

  • Gregory SG, Barlow KF, McLay KE, et al. (2006). "The DNA sequence and biological annotation of human chromosome 1". Nature. 441 (7091): 315–21. Bibcode:2006Natur.441..315G. doi:10.1038/nature04727. PMID 16710414.
  • Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
  • Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi:10.1073/pnas.0404720101. PMC 514446. PMID 15302935.
  • Marenholz I, Heizmann CW (2004). "S100A16, a ubiquitously expressed EF-hand protein which is up-regulated in tumors". Biochem. Biophys. Res. Commun. 313 (2): 237–44. doi:10.1016/j.bbrc.2003.11.115. PMID 14684152.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.


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